# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-RanBP PF00641.17 30 Fus - 518 2.2e-12 45.9 9.3 1 1 3.8e-16 3.2e-12 45.4 9.3 1 30 415 446 415 446 0.98 Zn-finger in Ran binding protein and others RRM_1 PF00076.21 70 Fus - 518 3.2e-11 42.8 0.0 1 1 1.4e-14 1.2e-10 41.0 0.0 1 70 280 358 280 358 0.93 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Nono - 473 9.5e-32 108.5 0.0 1 2 9.3e-20 7.8e-16 57.6 0.0 1 70 78 142 78 142 0.98 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Nono - 473 9.5e-32 108.5 0.0 2 2 5.4e-17 4.5e-13 48.7 0.0 1 61 152 212 152 219 0.95 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NOPS PF08075.10 52 Nono - 473 3.7e-27 94.1 1.4 1 1 1.2e-30 1e-26 92.7 1.4 1 52 223 274 223 274 1.00 NOPS (NUC059) domain RRM_1 PF00076.21 70 Pspc1 - 523 1.6e-32 111.0 0.1 1 2 1.4e-19 1.1e-15 57.0 0.0 1 70 83 147 83 147 0.98 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Pspc1 - 523 1.6e-32 111.0 0.1 2 2 6.4e-18 5.3e-14 51.7 0.0 1 59 157 215 157 221 0.96 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NOPS PF08075.10 52 Pspc1 - 523 9.6e-29 99.2 2.4 1 2 1.1e-32 9.6e-29 99.2 2.4 1 52 228 279 228 279 1.00 NOPS (NUC059) domain NOPS PF08075.10 52 Pspc1 - 523 9.6e-29 99.2 2.4 2 2 0.25 2.1e+03 -1.1 0.1 24 38 380 394 379 399 0.80 NOPS (NUC059) domain RRM_1 PF00076.21 70 Rbm14 - 669 7.9e-29 99.2 0.0 1 2 4.5e-14 7.6e-10 38.4 0.0 1 64 3 60 3 66 0.95 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Rbm14 - 669 7.9e-29 99.2 0.0 2 2 2.3e-20 3.8e-16 58.5 0.1 1 69 81 142 81 143 0.98 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Sfpq - 699 1.9e-30 104.4 0.1 1 2 8.7e-17 7.3e-13 48.1 0.0 1 70 291 355 291 355 0.97 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Sfpq - 699 1.9e-30 104.4 0.1 2 2 1.1e-18 8.9e-15 54.2 0.0 2 61 366 425 365 432 0.94 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) NOPS PF08075.10 52 Sfpq - 699 3e-28 97.6 1.0 1 1 8.6e-32 7.2e-28 96.4 1.0 1 52 436 487 436 487 1.00 NOPS (NUC059) domain RRM_1 PF00076.21 70 Tardbp - 414 3.8e-26 90.6 0.2 1 2 3.8e-19 6.3e-15 54.7 0.0 1 60 106 164 106 172 0.90 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 PF00076.21 70 Tardbp - 414 3.8e-26 90.6 0.2 2 2 1.6e-12 2.6e-08 33.4 0.2 1 53 193 241 193 243 0.95 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) # # Program: hmmscan # Version: 3.1b2 (February 2015) # Pipeline mode: SCAN # Query file: paraspeckles_fasta.txt # Target file: Pfam-A.hmm # Option settings: hmmscan --domtblout paraspeckles_domain.txt -E 1e-10 --cpu 4 Pfam-A.hmm paraspeckles_fasta.txt # Current dir: /Users/Nakagawa_imac/GoogleDrive/ncRNA_review # Date: Tue Nov 26 15:18:49 2019 # [ok]